Here are some tips:
Always replace the pilot bearing and use the factory one, not the one that comes with the clutch kit.
The factory bearing has a seal to keep water from entering the bearing and drying out. It is also supplied with a lubricant that does not dry out. Many a cheap pilot bearing has ruined a crankshaft.
Always replace the hydraulic slave cylinder. The throw-out bearing wears grooves in the slave shaft, not worth risking a problem. It would be a shame to have to go back in to replace a bad slave.
Never turn the flywheel. If it has hot spots replace it. If the hot spots cannot be felt with your finger nail then use some 500 grit sandpaper to clean it up. Wash the surface with soapy water.
Always replace the flywheel bolts if you remove the flywheel and clean the surface on the back of the crankshaft. The bolts can stretch and hit the rear main cap, causing some noise and depositing metal into the engine.
Always repalce the driveshaft straps and bolts, they are one time use. If you do not, you could lose a driveshaft down the road.
Bleed the cltch hydraulic system with a pressure bleeder and DOT 4 fluid.
Hope this helps.