Snkeyez,
Ab is correct, the violet wire running from the slit second box was connected to a wire located in the large wire bundle which runs in the front of the drivers side valve cover, when hooked up it gives the split second box the ability to control the fuel injectors and timing. On a stock Paxton install the split second box only pulls timing out and turns on the auxiliary fuel pumps with the 12V out as it senses pressure in the intake manifold. They did use the split second software to tune it, unfortunatley I don't have a copy of the tune that's in the car. Of course once you have the ability to control the fuel and spark you also have the ability to damage the engine, too much timing/not enough fuel under boost is not a good combination, so make sure your tuner is experienced. When mine was done, they started off slow, running it to 2000 rpm, checking the A/F, adjusting fuel/spark, run it to 2500 rpm, check A/F, adjust fuel/spark, run it to 3000 rpm, etc finally ending up with full pulls up to 6K.
The DLM intercooler replaces the pretty small cooler (its really an oil cooler that comes with the Paxton kit) that mounts up in front of the car behind the front valence. The DLM cooler is about 3 times the size of the stock cooler and if I remember correctly just about quadruples the water capacity of the system - all of which of course helps keep the pressurized air entering the intake manifold as cool as possible.
I'm running stock Champion plugs with .032" gap, I did put in new plugs when I installed the blower kit. With 7-8 pounds of boost, I really don't see the need to go to a colder plug, but I'm sure there are differing opinions on this. I've never been a big believer in all of the "fancy" plug designs/materials, as long as the ignition system and spark plug heat range are up to par with what you are trying to accomplish with the engine (boost/nitrous/high compression) I don't think triple platinum plugs with eight electrodes are going to be a great benefit.