If everything is working perfectly, HPT will connect using the Chrysler protocol for logging, if that does work, the data refresh rate is decent. On the other hand, if it connects using generic OBD2 it is anywhere from unusable slow to slow, the later G3 years being typically faster because they communicate via PCI. HPT is perfectly capable of using the SCI protocol on all 1996-2006 JTEC, I don't know what the issue exactly is but I believe it has to do with protocol detection since their cable has to work with GM - Ford - Dodge and other makes.
As mentioned earlier in this thread, I do make a logging cable specifically for J2610 SCI A - B but most people won't bother because it is clunky compared to HPT, requires a separate piece of software - hardware over the SCT or HPT device, and all around is more effort and expense than most people want to make. The Chrysler protocol logs byte by byte, so the logging tool has to be very efficient at organizing the requests and sending them out immediatly after the ecu has sent a response to a request. The DRB3 is very slow as there is something like 50ms between requests, if you are watching 10 ram addresses the DRB3 with that delay, they will update those addresses only two times per second. If you are using the DRB3 in "flight recorder" mode, then it handles the bytes much faster (relatively speaking), up to 500 send-receives per second. Seperatly, you need with the SCI cable a definition for the logging parameters that is specific to your ecu. With that it is possible to log some parameters beyond the standard ones as opposed to the ones that you can see in the DRB3 (or HPT), for example the power enrichment multiplier.
Besides the actual application software that Chrysler used to alter parameters in the engine controller file, they had a device for data logging and editing parameters on the fly if you had a specially modified controller. It is interesting to think though, that to change parameters on the fly, the application engineer had to go address by address and key in the changes using a numberic key pad, quite a lot of work compared to altering parameters on a laptop as can be done with INCA.
Just like with other makes or models that HPT or SCT support, you are only seeing a handful of the calibration variables - tables that are in the engine controller. I can understand the interest in wanting to know how these controllers work, but to truley understand that, you would need to disassemble the ecu operating system.
The student workbooks are useful however keep in mind that there is information in them that is wrong, for examble how they explain the JTEC fuel calculation as these controllers are not VE based, i.e. you cannot scale for different injectors as you can in newer controllers such as NGC-GPEC, GM LS and really anything Ford.